It would help if you put your location into your profile. You might have someone close enough by that would come over and give you a hand diagnosing the problem.
You might be able to narrow it down by using a stethoscope or use a long screwdriver as a hearing aid around that end of the car with the engine running to try to narrow down the area actually making the noises.
Unfortunately, there are many possible causes of rattles:
The honeycombs of the Cats will kick up a ruckus if they break up
The drive end of the CAS has been known to crack at the rollpin hole and that would allow a lot of free-play between the shaft and the drive dog which could sound like a rattle but you should also experience a degrade in the performance
Any chance that the bolts for the Axle Center Shaft have come loose or the bearing inside has failed or the cupped washer is out of position?
The retaining ring on the throw-out bearing is also finicky and if it de-clipped, the TOB could be rattling around
The pilot bush is suspect especially if you had some trouble getting the gearbox to align with the engine during reassembly
I would suggest starting with the easiest thing to test, being the CAS (remember to mark the housing to the head to preserve the timing) followed by tapping the cats to see if either has failed and then before removing the gearbox, check the Center Shaft for proper fit and fitness and, then, if you don't find anything, pulling the gearbox sounds inevitable. It isn't a lot of fun but quite doable.
There is a good write-up on the removal process in the WikiLEC. Here is a link:
Gearbox Removal