AndyT
I had a very badly aligned top on a BRG car I'm working on and it also leaked like a sieve. I noticed that the black main hood frame bracket was further forward in the BRG B pillar post on one side and also sat much lower in the B Post. If you look at the top of inboard forward black corner of the convertible top B post bracket you can see how much space there is between it and the B post itself (car colour) and also you can see how much space there is between the top of the soft top bracket and the B post pillar top.
The way I approached this was to put the 6 bolts in (I think mine were M8 X 100mm - metric thread. I didn't bother cutting one down to 80mm ) I put a touch of oil on the first part of the threads to lube the dirty threads on the car and they all hand screwed in until hand tight. Then measured the length of each bolt left sticking out with a mm ruler. Suffice to say they were very different on each side.
There is also a bolt on the inboard side at the top rear of the soft top bracket that is angled against a stop -- this has 2 locking nuts at the rear. This controls the angle of the falling pillar (how far forward the falling pillar goes when you raise the top but before you lock it down. From your posting this may be where you have a problem. I removed some of the rear cavity trim and loosened the 4 bolts securing the conv top to B Post.
On the assumption that the elan has an exceptionally rigid chassis and therefore (barring accident damage) the B posts are correctly located, I then baselined everything on the hood bracket positions, in my case because everything pointed to the left side having changed, I measured everything on the right side (3 100mm bolts plus the angled bolt) and adjusted the left side to match and set the 2 eccentric cams on the rear deck arms (as mentioned by LGM) to their minimum on the cam. Then I erected the hood and checked a load of things:
Centration of the header rail with lockdown points (before clipping it down)
Whether the rails along the top of the 2 side windows were straight
How much effort it took to take the top 'over-centre' (from when the front part is nearly straight up)
The position of the rear deck arms (are they both straight and locked)
Then check the position of the windows in all the seals and also the interface between the bottom of the falling pillar seal and the top of the B post seal.
It took a lot of patience and time (~4 hours) to get it right. I would highly recommend baselining as, though adjustments were still required, the whole top fit and operated much better after setting both sides equal.
A rough guide is:
The 4 horizontal 100mm bolts control centration of the hood on the header rail and also the 'reach to header rail' along with the angled nut with 2 nuts on it.
The 2 vertical bolts control the fit of B post to falling pillar seal and how far down the rear deck lid has to go to lock as well as vertical contact of header rail with top of windscreen.
The angled nuts are the real bugger to get right as small adjustments make a lot of difference. They seem to influence the 'over-centre effort', contact with rear deck, the trailing rear arm position and the alignment of the falling pillar seals with the rear edge of the window glass and also the straightness of the 2 seals along the top of each window.
I adjusted the eccentric cams on the rear deck arms last to get them both to lock straight and evenly.
Before you start on the adjustments ensure that you've tightened all the hood frame allan bolts -- a couple of mine were loose.
I'll try to take some photos next time I'm over at the nursery working on the car.
Good luck
(Edit 7 Apr 09 -- photos added)

